Atomic Observation on Diamond (001) Surfaces with Near-Contact Atomic Force Microscopy
masahiro.fukuda / C001_dimer_chain_AFM
概要
Density-functional-theory calculations revealed that the formation of tilted Si–C bonds between scanning Si probes and diamond (001) surfaces, coupled with the reordering of surface C–C dimers, are critical factors for achieving atomic resolution. The mechanism of high-resolution AFM imaging was elucidated by force spectroscopy combined with first-principles calculations. This database provides the input files and the results of the DFT calculations by OpenMX.
- URL
- https://isspns-gitlab.issp.u-tokyo.ac.jp/masahiro.fukuda/C001_dimer_chain_AFM
- DOI
- 10.1021/acs.nanolett.4c05395
- 被引用数
- 9 件（OpenAlex、2026-10-05 時点）
- 著者
- Runnan Zhang, Yuuki Yasui, Masahiro Fukuda, Taisuke Ozaki, Masahiko Ogura, Toshiharu Makino, Daisuke Takeuchi, Yoshiaki Sugimoto
- ライセンス
- CC BY 4.0
- キーワード
- diamond (001) surfaceatomic resolution imagingC–Si bond formationdiamond growthsurface defectsadsorbed moleculesartificial nanostructures（論文のキーワード、OpenAlex より）
- カテゴリ
- 電子状態計算（固体物理）
- 関連文献
- Nano Letters 2025 25 (3), 1101-1107
- 関連ソフトウェア
- OpenMX (リンク先: PASUMS ソフトウェアカタログ)
- 連絡先
- masahiro.fukuda__at__issp.u-tokyo.ac.jp (__at__ を @ に置き換えてください。)
論文と引用
このデータを利用した場合は、次の論文を引用してください。
Runnan Zhang et al., "Atomic Observation on Diamond (001) Surfaces with Near-Contact Atomic Force Microscopy", Nano Letters 25(3), 1101–1107 (2025). https://doi.org/10.1021/acs.nanolett.4c05395
BibTeX を表示
@article{Zhang_2025, title={Atomic Observation on Diamond (001) Surfaces with Near-Contact Atomic Force Microscopy}, volume={25}, ISSN={1530-6992}, url={http://dx.doi.org/10.1021/acs.nanolett.4c05395}, DOI={10.1021/acs.nanolett.4c05395}, number={3}, journal={Nano Letters}, publisher={American Chemical Society (ACS)}, author={Zhang, Runnan and Yasui, Yuuki and Fukuda, Masahiro and Ozaki, Taisuke and Ogura, Masahiko and Makino, Toshiharu and Takeuchi, Daisuke and Sugimoto, Yoshiaki}, year={2025}, month=Jan, pages={1101–1107} }書誌情報とオープンアクセスのリンクは OpenAlex、BibTeX は doi.org（出版社が登録した情報）から取得しています。
README
Atomic Observation on Diamond (001) Surfaces with Near-Contact Atomic Force Microscopy
About
Density-functional-theory calculations revealed that the formation of tilted Si-C bonds between scanning Si probes and diamond (001) surfaces, coupled with the reordering of surface C-C dimers, are critical factors for achieving atomic resolution. The mechanism of high-resolution AFM imaging was elucidated by force spectroscopy combined with first-principles calculations. This database provides the input files and the results of the DFT calculations by OpenMX.
License, Copyright of the database
- CC BY 4.0
We hope that you cite the reference when you publish the results using our data:
Nano Letters 2025 25 (3), 1101-1107
Usage
Install Database
Using git
git clone https://isspns-gitlab.issp.u-tokyo.ac.jp/masahiro.fukuda/C001_dimer_chain_AFM.gitOn browser Click the download button of this project.
Data info
- This database includes input files and results of AFM simulation by DFT.
data/calc/C001- Carbon dimer chains on the C(001) diamond surface.
data/calc/HC001- Hydrogenated carbon dimer chains on the C(001) diamond surface.
data/calc/C001_vacancy_for_FigS1- Carbon dimer chains on the C(001) diamond surface with vacancy shown in Fig.S1.
data/calc/Si001_vacancy_for_FigS1- Carbon dimer chains on the Si(001) diamond surface with vacancy shown in Fig.S1.
data/Data_of_Fig3- Raw data for ploting Fig.3 in the paper.
data/Data_of_Fig4- Raw data for ploting Fig.4 in the paper.
- This database includes input files and results of AFM simulation by DFT.
Contact
Masahiro FUKUDA (ISSP, Univ. of Tokyo)
masahiro.fukuda__at__issp.u-tokyo.ac.jp
please replace __at__ by @.
出典: https://isspns-gitlab.issp.u-tokyo.ac.jp/masahiro.fukuda/C001_dimer_chain_AFM の README