Dimer ribbon structures on diamond (001) surfaces revealed with atomic force microscopy
masahiro.fukuda / C001_dimer_ribbon_AFM
Overview
Density-functional-theory calculations revealed that the diamond (001) surfaces and observed specific structures, where odd numbers of dimers form ribbonlike configurations. The mechanism of high-resolution AFM imaging was elucidated by force spectroscopy combined with first-principles calculations. Our findings provide a crucial foundation for optimizing the film growth process of diamond surfaces. This database provides the input files and the results of the DFT calculations by OpenMX.
- URL
- https://isspns-gitlab.issp.u-tokyo.ac.jp/masahiro.fukuda/C001_dimer_ribbon_AFM
- DOI
- 10.1103/PhysRevResearch.7.023036
- Citations
- 1 (OpenAlex, as of 2026-10-05)
- Authors
- Runnan Zhang, Yuuki Yasui, Masahiro Fukuda, Masahiko Ogura, Toshiharu Makino, Daisuke Takeuchi, Taisuke Ozaki, Yoshiaki Sugimoto
- License
- CC BY 4.0
- Keywords
- diamond (001) surfacedimersdiamond filmsfilm growthsurface structureatomic resolution imagingdensity functional theory (keywords of the paper, from OpenAlex)
- Category
- Electronic structure (solid state physics)
- References
- Phys. Rev. Research 7, 023036
- Related software
- OpenMX (Links to: PASUMS software catalog)
- Contact
- masahiro.fukuda__at__issp.u-tokyo.ac.jp (Please replace __at__ with @.)
Paper and citation
If you use this data, please cite the following paper.
Runnan Zhang et al., "Dimer ribbon structures on diamond (001) surfaces revealed with atomic force microscopy", Physical Review Research 7(2) (2025). https://doi.org/10.1103/PhysRevResearch.7.023036
Show BibTeX
@article{Zhang_2025, title={Dimer ribbon structures on diamond (001) surfaces revealed with atomic force microscopy}, volume={7}, ISSN={2643-1564}, url={http://dx.doi.org/10.1103/physrevresearch.7.023036}, DOI={10.1103/physrevresearch.7.023036}, number={2}, journal={Physical Review Research}, publisher={American Physical Society (APS)}, author={Zhang, Runnan and Yasui, Yuuki and Fukuda, Masahiro and Ogura, Masahiko and Makino, Toshiharu and Takeuchi, Daisuke and Ozaki, Taisuke and Sugimoto, Yoshiaki}, year={2025}, month=Apr }Bibliographic details and the open-access link are from OpenAlex; the BibTeX is from doi.org (as registered by the publisher).
README
Dimer ribbon structures on diamond (001) surfaces revealed with atomic force microscopy
About
Density-functional-theory calculations revealed that the diamond (001) surfaces and observed specific structures, where odd numbers of dimers form ribbonlike configurations. The mechanism of high-resolution AFM imaging was elucidated by force spectroscopy combined with first-principles calculations. Our findings provide a crucial foundation for optimizing the film growth process of diamond surfaces. This database provides the input files and the results of the DFT calculations by OpenMX.
License, Copyright of the database
- CC BY 4.0
We hope that you cite the reference when you publish the results using our data:
Phys. Rev. Research 7, 023036
Usage
Install Database
Using git
git clone https://isspns-gitlab.issp.u-tokyo.ac.jp/masahiro.fukuda/C001_dimer_ribbon_AFM.gitOn browser Click the download button of this project.
Data info
- This database includes input files and results of AFM simulation by DFT.
data/calc/ribbons- Carbon dimer ribbons on the C(001) diamond dimer surface.
(Structures in Figs.4 and 5)- A, B
- AA, AB, AA', AB', BB
- ABA, AAA
- ABAA, ABAB
- ABABA
- Carbon dimer ribbons on the C(001) diamond dimer surface.
data/calc/two_dimer_chains- Two adjacent dimer ribbons and dimer ribbons separated by a gap.
(Structures in Fig.6)
- Two adjacent dimer ribbons and dimer ribbons separated by a gap.
- This database includes input files and results of AFM simulation by DFT.
Contact
Masahiro FUKUDA (ISSP, Univ. of Tokyo)
masahiro.fukuda__at__issp.u-tokyo.ac.jp
please replace __at__ by @.
Source: https://isspns-gitlab.issp.u-tokyo.ac.jp/masahiro.fukuda/C001_dimer_ribbon_AFM README